Bagels have always held a special place in my heart. There’s something about their comforting, chewy texture and that perfect little hole in the middle that draws me in. On busy weekday mornings, when time is tight but I still crave something wholesome and filling, these homemade protein bagels have become my go-to recipe. Not only are they quick and easy to whip up, but they also pack a nutritional punch with Greek yogurt, making them a smart choice for breakfast or a snack.
Why You Should Add These Protein Bagels to Your Recipe Rotation
These homemade protein bagels are a triumph of simplicity and taste. They come together in no time and are infinitely customizable to suit your family’s preferences. Imagine a warm bagel, meticulously shaped and baked in the air fryer until perfectly golden brown. These bagels are not only budget-friendly but also fantastic for meal prepping ahead of a hectic week. You can freeze them in batches, ensuring you always have a healthy breakfast option available. The best part? Kids love them! Their fun shape and chewiness match perfectly with a variety of toppings, making them a hit with even the pickiest eaters.
"These bagels changed my breakfast game! They’re quick, healthy, and so easy to customize with my favorite toppings!" – A delighted home cook.
Preparing Homemade Protein Bagels
Making these bagels is a delightful process that brings together just a handful of ingredients. It’s as easy as mixing, shaping, and air frying. You’ll find that this uncomplicated method allows for a bit of creativity—making it a great opportunity for you to engage with your kids or get adventurous with flavors.
- Mix the Ingredients: Combine the flour, Greek yogurt, baking powder, and salt until you have a soft dough.
- Shape the Bagels: Divide and shape the dough into iconic bagel forms that feel familiar and special.
- Air Fry: These bagels will cook beautifully in the air fryer—getting that crispy exterior while maintaining a soft center.
What You’ll Need for Your Protein Bagels
Gathering the ingredients for these bagels couldn’t be simpler. Here’s what you’ll need:
- 2 cups all-purpose flour
- 1 cup Greek yogurt
- 1 teaspoon baking powder
- 1/2 teaspoon salt
- Optional toppings: Think about sesame seeds or that zesty everything bagel seasoning. Don’t let these extras slip by; they can elevate every bite.
Feel free to swap the all-purpose flour with whole wheat or gluten-free alternatives if that’s what you prefer. And while Greek yogurt is a star ingredient here, you could use a plant-based yogurt if you’re looking for dairy-free options.
Directions to Get Cooking
- Preheat your air fryer to 350°F (175°C).
- In a mixing bowl, combine the flour, Greek yogurt, baking powder, and salt. Stir until a dough forms.
- Divide the dough into equal portions, shaping each into a bagel.
- Carefully place the bagels in the air fryer basket, giving them enough space to expand.
- Cook for about 10-12 minutes, or until they turn a lovely golden brown.
- Once done, remove them from the air fryer and allow them to cool slightly before digging in.

Best Ways to Enjoy Your Homemade Protein Bagels
Serving these bagels can be as fun as making them! Try toasting them lightly and spreading on some cream cheese for the classic touch. Feeling adventurous? Try layering on avocado and a sprinkle of red pepper flakes for a hearty option. Or, go sweet with nut butter and a drizzle of honey. Pair them with a side of fresh fruit or a yogurt parfait, and you’ve got a satisfying meal to kick-start your day.
Keeping Leftovers Fresh
If you somehow have leftovers (which is rare!), storing them is a breeze. Keep them in an airtight container at room temperature for up to 2 days. To store longer, pop them in the freezer; they can keep well for about a month. Just remember to let them cool completely before freezing to maintain their delightful texture.
Pro Chef Tips
- For an extra layer of flavor, incorporate herbs directly into the dough. Think about adding garlic powder, dried basil, or even a bit of grated cheese!
- Keep the bagels uniform in shape so they cook evenly. A simple trick is to use a donut cutter or even the lid of a jar for perfect circles.
- Experiment with different toppings right before they go into the air fryer—each one adding a unique twist.
Different Ways to Try It
Play around with your bagel flavors! Swap in whole wheat flour for a nuttier taste, or challenge your palate with various toppings like capers, sun-dried tomatoes, or even caramelized onions. Garlic knots or everything bagels? You can easily create your family’s favorite bagel style by simply varying the seasonings.
Your Questions Answered
How long does it take to make these bagels?
From start to finish, you’re looking at about 25-30 minutes—perfect for a busy morning!
Can I use a different type of yogurt?
Absolutely! Feel free to use regular yogurt or plant-based options for a different flavor profile.
How should I store the leftovers?
Keep them in an airtight container at room temperature for 2 days, or freeze them for longer storage.
Elevate your breakfasts with these delightful homemade protein bagels, and let their comfort and nutrition become a regular presence on your table. Once you make them, I have a feeling they’ll become a staple in your home kitchen just like they have in mine.

Protein Bagels
Ingredients
Method
- Preheat your air fryer to 350°F (175°C).
- In a mixing bowl, combine the flour, Greek yogurt, baking powder, and salt. Stir until a dough forms.
- Divide the dough into equal portions, shaping each into a bagel.
- Carefully place the bagels in the air fryer basket, giving them enough space to expand.
- Cook for about 10-12 minutes, or until they turn a lovely golden brown.
- Once done, remove them from the air fryer and allow them to cool slightly before serving.